Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-4-Internal Loop pdb2ldzFA.n1-30
Source: [PDB-id:chain] 2ldz:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, MINIMIZED AVERAGE STRUCTURE
Source: Compound LEAD-DEPENDENT RIBOZYMEILS: MOLECULE IS RNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (5, 26), (10, 23)
Primary structure ('_': anchors) _GA_-_CGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 6: C1'-exo, 7: C2'-exo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 9 Watson-Crick/Watson-Crick cis y
3 4 5 Watson-Crick/Watson-Crick cis
4 6 7 Hoogsteen/O2' ?
5 6 8 Hoogsteen/O2' ?
6 7 8 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters