Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Segment pdb2ldz1A.i5-10
Source: [PDB-id:chain] 2ldz:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, MINIMIZED AVERAGE STRUCTURE
Source: Compound LEAD-DEPENDENT RIBOZYMEILS: MOLECULE IS RNA
Source: Resolution NOT APPLICABLE.
Position (5, 10)
Primary structure ('_': anchors) _CGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 4: C2'-exo, 5: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 4 Hoogsteen/O2' ?
2 3 5 Hoogsteen/O2' ?
3 4 5 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters