Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb2k961A.e6-24
Source: [PDB-id:chain] 2k96:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE RDC-REFINED P2B-P3 PSEUDOKNOT FROM HUMAN TELOMERASE RNA (DELTA U177)
Source: Compound TELOMERASE RNA P2B-P3 PSEUDOKNOT
Source: Resolution NOT APPLICABLE.
Position (6, 24)
Primary structure ('_': anchors) _UUUUUCUCGCUGACUUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 2: O4'-endo, 3: C2'-exo, 4: C4'-exo, 5: C2'-exo, 6: O4'-endo, 7: O4'-endo, 9: C4'-endo, 11: C2'-exo, 17: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 5 6
3 10 11
4 12 13
5 13 14
6 14 15
7 16 17
8 18 19
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Hoogsteen/O2' ?
2 1 19 Watson-Crick/Watson-Crick cis
3 6 7 Bifurcated/O2' ?
4 7 12 O2'/Bifurcated ?
5 8 10 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters