Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2k4c1A.e53-61
Source: [PDB-id:chain] 2k4c:A (&rarr PDB)
Source: Information TRNAPHE-BASED HOMOLOGY MODEL FOR TRNAVAL REFINED AGAINST BASE N-H RDCS IN TWO MEDIA AND SAXS DATA
Source: Compound 76-MER
Source: Resolution NOT APPLICABLE.
Position (53, 61)
Primary structure ('_': anchors) _UUCGAUC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-endo, 7: C3'-exo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 6 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans
3 3 5 Hoogsteen/O2' ?
4 7 8 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters