Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb2jyh1A.e19-24
Source: [PDB-id:chain] 2jyh:A (&rarr PDB)
Source: Information RIGID-BODY REFINEMENT OF THE TETRALOOP-RECEPTOR RNA COMPLEX
Source: Compound RNA (43-MER)
Source: Resolution NOT APPLICABLE.
Position (19, 24)
Primary structure ('_': anchors) _GAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 3: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/O2' ?
3 2 5 Hoogsteen/Sugar trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters