Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb2jxvFA.n11-22
Source: [PDB-id:chain] 2jxv:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF A LET-7 MIRNA:LIN-41 MRNA COMPLEX FROM C. ELEGANS
Source: Compound RNA (33-MER)
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (8, 26), (11, 22)
Primary structure ('_': anchors) _AUU_-_UA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C2'-exo, 3: C2'-endo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 7
3 3 4
4 4 5
5 4 6
6 6 7
7 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis y
3 4 7 Watson-Crick/Watson-Crick cis
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters