Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb2jxv1A.n1-33
Source: [PDB-id:chain] 2jxv:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF A LET-7 MIRNA:LIN-41 MRNA COMPLEX FROM C. ELEGANS
Source: Compound RNA (33-MER)
Source: Resolution NOT APPLICABLE.
Position (8, 26), (11, 22)
Primary structure ('_': anchors) _UA_-_AUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-exo, 7: C2'-endo, 8: C2'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 3 8
4 4 6
5 5 6
6 6 7
7 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis y
3 3 6 Watson-Crick/Watson-Crick cis
4 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters