Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-Hairpin pdb2jtp1A.e16-20
Source: [PDB-id:chain] 2jtp:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE FRAMESHIFT-INDUCING RNA STEM-LOOP IN SIV
Source: Compound SIV17-50 RNA (34-MER)
Source: Resolution NOT APPLICABLE.
Position (16, 20)
Primary structure ('_': anchors) _CCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 2: C2'-endo, 3: C2'-endo, 4: C1'-exo, 5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Watson-Crick/Watson-Crick cis
2 2 4 Bifurcated/O2' ?
3 3 5 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters