Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-2-Internal Loop pdb2jq71B.n12-26
Source: [PDB-id:chain] 2jq7:B (&rarr PDB)
Source: Information MODEL FOR THIOSTREPTON BINDING TO THE RIBOSOMAL L11-RNA
Source: Compound RIBOSOMAL RNA
Source: Resolution NOT APPLICABLE.
Position (9, 29), (12, 26)
Primary structure ('_': anchors) _UU_-_AU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C2'-endo, 3: C2'-endo, 5: C2'-exo, 8: C1'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6
2 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters