Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2jq71B.e14-24
Source: [PDB-id:chain] 2jq7:B (&rarr PDB)
Source: Information MODEL FOR THIOSTREPTON BINDING TO THE RIBOSOMAL L11-RNA
Source: Compound RIBOSOMAL RNA
Source: Resolution NOT APPLICABLE.
Position (14, 24)
Primary structure ('_': anchors) _UUAGAAGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-endo, 3: C2'-exo, 6: C2'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 8 9 ↑
3 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis y
2 2 6 O2'/Watson-Crick ?
3 3 5 O2'/Watson-Crick ?
4 3 6 O2'/Watson-Crick ?
5 6 10 Bifurcated/O2' ?
6 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters