Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-3-Internal Loop pdb2jl8FA.n1352-1360
Source: [PDB-id:chain] 2jl8:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.45 ANGSTROMS.
Position (1348, 1362), (1352, 1360)
Primary structure ('_': anchors) _G_-_CAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 ↑
2 4 5 ↑
3 5 6 ↑
4 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 O2'/Watson-Crick ?
2 1 8 Watson-Crick/Watson-Crick cis
3 2 3 Hoogsteen/O2' ?
4 3 4 Watson-Crick/Watson-Crick cis
5 3 7 Hoogsteen/Watson-Crick trans
6 5 7 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters