Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-7-Internal Loop pdb2jl81A.n1503-1549
Source: [PDB-id:chain] 2jl8:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.45 ANGSTROMS.
Position (1511, 1541), (1514, 1533)
Primary structure ('_': anchors) _GG_-_CCAACAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn, 10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 2 8
3 8 9
4 11 12
5 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 4 5 Watson-Crick/Watson-Crick cis y
3 8 11 Bifurcated/O2' ?
4 9 11 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters