Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Segment pdb2jl81A.i2238-2256
Source: [PDB-id:chain] 2jl8:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.45 ANGSTROMS.
Position (2238, 2256)
Primary structure ('_': anchors) _GCCCAAAGGUCCCCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 6: C2'-endo, 7: C3'-exo, 8: C2'-endo, 10: C2'-exo, 16: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
3 7 9
4 9 10
5 10 11
6 11 12
7 12 13
8 13 14
9 14 15
10 15 16
11 18 19
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 8 Bifurcated/O2' ?
2 7 9 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters