Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'24-Segment pdb2jl71W.i42-67
Source: [PDB-id:chain] 2jl7:W (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT.
Source: Compound E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED
Source: Resolution 3.45 ANGSTROMS.
Position (42, 67)
Primary structure ('_': anchors) _CGUGUCCUUGGUUCGAUUCCGAGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C2'-endo, 6: C2'-endo, 7: C2'-endo, 17: C2'-endo, 19: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 6: syn, 14: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 11 12 ↑
3 11 22 →
4 13 14 &larr
5 17 20 ↑
6 18 19 ↑
7 22 23 ↑
8 23 24 ↑
9 24 25 ↑
10 25 26 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 8 24 Watson-Crick/Watson-Crick cis y
2 9 23 Bifurcated/Watson-Crick cis y
3 13 17 Hoogsteen/Watson-Crick trans y
4 17 20 Bifurcated/O2' ?
5 19 20 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters