Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Hairpin pdb2jl71A.e311-324
Source: [PDB-id:chain] 2jl7:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT.
Source: Compound 16S RRNA
Source: Resolution 3.45 ANGSTROMS.
Position (311, 324)
Primary structure ('_': anchors) _ACUGAGACACGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C2'-endo, 9: O4'-endo, 10: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		8: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 6 7 ↑
6 8 10 ↑
7 10 13 ↑
8 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 O2'/Bifurcated ?
2 1 14 Watson-Crick/Watson-Crick cis
3 2 9 O2'/Hoogsteen ?
4 2 13 Watson-Crick/Watson-Crick cis
5 3 10 Hoogsteen/Watson-Crick trans y
6 3 13 Sugar/Watson-Crick cis y
7 4 8 Hoogsteen/Watson-Crick trans
8 5 7 Hoogsteen/O2' ?
9 5 8 O2'/Bifurcated ?
10 10 13 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters