Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-7-Internal Loop pdb2jl6FA.n285-380
Source: [PDB-id:chain] 2jl6:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.45 ANGSTROMS.
Position (289, 376), (297, 370)
Primary structure ('_': anchors) _UAGGU_-_GGCCGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
14: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 13: syn, 15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
3 5 10
4 6 7
5 8 10
6 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 4 12 Watson-Crick/Watson-Crick cis
3 5 11 Bifurcated/O2' trans
4 6 10 Watson-Crick/Hoogsteen trans
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters