Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-2-Internal Loop pdb2jl6FA.n2470-2528
Source: [PDB-id:chain] 2jl6:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.45 ANGSTROMS.
Position (2467, 2535), (2470, 2528)
Primary structure ('_': anchors) _ACGCGA_-_UC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 5 8
3 5 9
4 10 11
5 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Hoogsteen/O2' ?
2 1 12 Watson-Crick/Watson-Crick cis
3 4 11 Watson-Crick/Watson-Crick cis y
4 5 10 Watson-Crick/Watson-Crick cis
5 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters