Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2jl51A.n143-158
Source: [PDB-id:chain] 2jl5:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT.
Source: Compound 16S RRNA
Source: Resolution 3.45 ANGSTROMS.
Position (137, 165), (143, 158)
Primary structure ('_': anchors) _GACAA_-_CUAAUC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		13: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 5 6 ↑
5 6 7 ↑
6 8 9 ↑
7 9 10 ↑
8 11 12 ↑
9 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 4 11 Hoogsteen/Watson-Crick trans
3 5 10 Watson-Crick/Hoogsteen trans
4 6 7 Bifurcated/O2' ?
5 6 9 Watson-Crick/Hoogsteen trans y
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters