Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-8-Internal Loop pdb2jl51A.n1230-1261
Source: [PDB-id:chain] 2jl5:A (&rarr PDB)
Source: Information INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT.
Source: Compound 16S RRNA
Source: Resolution 3.45 ANGSTROMS.
Position (1232, 1259), (1239, 1250)
Primary structure ('_': anchors) _AUGCCA_-_GAGCUAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		16: C2'-endo, 17: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn, 15: syn, 17: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 15 ↑
2 4 5 ↑
3 7 8 ↑
4 7 11 →
5 9 10 ↑
6 11 12 ↑
7 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Sugar/O2' ?
2 1 18 Watson-Crick/Watson-Crick cis
3 5 12 Watson-Crick/Watson-Crick cis
4 7 10 Sugar/Hoogsteen trans
5 8 9 Watson-Crick/Watson-Crick cis
6 12 18 O2'/Sugar ?
7 15 18 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters