Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2j37FZ.n220-268
Source: [PDB-id:chain] 2j37:Z (&rarr PDB)
Source: Information MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS
Source: Compound RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 8.00 ANGSTROMS.
Position (224, 264), (229, 258)
Primary structure ('_': anchors) _CGAAC_-_CAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo, 4: C4'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3
2 3 4
3 4 11
4 5 6
5 6 7
6 8 9
7 9 10
8 10 11
9 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 12 Hoogsteen/Watson-Crick trans y
3 5 10 O2'/Bifurcated trans
4 5 11 Bifurcated/O2' ?
5 6 9 Watson-Crick/Watson-Crick cis y
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters