Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-4-Internal Loop pdb2j37FA.n18-57
Source: [PDB-id:chain] 2j37:A (&rarr PDB)
Source: Information MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS
Source: Compound SRP RNA
FLIPPED INTERNAL
Source: Resolution 8.00 ANGSTROMS.
Position (19, 56), (24, 51)
Primary structure ('_': anchors) _AGGU_-_AUAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-exo, 5: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 3 9
4 4 5
5 5 7
6 8 9
7 10 11
8 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis y
2 3 10 Watson-Crick/Watson-Crick cis
3 4 9 Watson-Crick/Watson-Crick cis y
4 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters