Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb2j371Z.e14-20
Source: [PDB-id:chain] 2j37:Z (&rarr PDB)
Source: Information MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS
Source: Compound RIBOSOMAL RNA
Source: Resolution 8.00 ANGSTROMS.
Position (14, 20)
Primary structure ('_': anchors) _CAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 4 6
4 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/O2' ?
3 2 6 Hoogsteen/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters