Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-3-Internal Loop pdb2j371A.n66-109
Source: [PDB-id:chain] 2j37:A (&rarr PDB)
Source: Information MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS
Source: Compound SRP RNA
Source: Resolution 8.00 ANGSTROMS.
Position (70, 105), (76, 101)
Primary structure ('_': anchors) _GAACC_-_AAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 6 &larr
3 4 5 ↑
4 5 6 ↑
5 7 11 →
6 9 10 ↑
7 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Hoogsteen/Sugar trans
3 3 7 O2'/Bifurcated ?
4 5 6 Bifurcated/O2' ?
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters