Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2j28FB.n838-924
Source: [PDB-id:chain] 2j28:B (&rarr PDB)
Source: Information MODEL OF E. COLI SRP BOUND TO 70S RNCS
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 8.00 ANGSTROMS.
Position (844, 918), (848, 914)
Primary structure ('_': anchors) _UUA_-_AUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 4: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 5 &larr
2 7 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/Watson-Crick cis y
3 2 7 Hoogsteen/Watson-Crick cis y
4 3 7 Watson-Crick/Watson-Crick cis y
5 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters