Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb2j28FB.n1182-1231
Source: [PDB-id:chain] 2j28:B (&rarr PDB)
Source: Information MODEL OF E. COLI SRP BOUND TO 70S RNCS
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 8.00 ANGSTROMS.
Position (1186, 1227), (1190, 1224)
Primary structure ('_': anchors) _AU_-_UAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo, 6: C2'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 6: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 7
4 7 8
5 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis
3 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters