Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-1-Internal Loop pdb2j281B.n2089-2131
Source: [PDB-id:chain] 2j28:B (&rarr PDB)
Source: Information MODEL OF E. COLI SRP BOUND TO 70S RNCS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 8.00 ANGSTROMS.
Position (2092, 2128), (2101, 2120)
Primary structure ('_': anchors) _UGGAAGUG_-_U_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 4: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 11 Watson-Crick/Watson-Crick cis
3 6 9 O2'/Bifurcated trans
4 6 10 O2'/Hoogsteen ?
5 7 8 Watson-Crick/Watson-Crick cis
6 9 10 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters