Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2j281A.n28-54
Source: [PDB-id:chain] 2j28:A (&rarr PDB)
Source: Information MODEL OF E. COLI SRP BOUND TO 70S RNCS
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 8.00 ANGSTROMS.
Position (22, 59), (28, 54)
Primary structure ('_': anchors) _GUCCC_-_GAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 7: C2'-exo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 9 &larr
2 4 5 ↑
3 8 9 ↑
4 10 11 ↑
5 11 12 ↑
6 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 6 Bifurcated/O2' ?
3 7 8 Watson-Crick/Watson-Crick cis
4 7 11 Watson-Crick/Sugar trans y
5 8 10 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters