Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2j03FA.n614-636
Source: [PDB-id:chain] 2j03:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE II.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.80 ANGSTROMS.
Position (616, 634), (620, 630)
Primary structure ('_': anchors) _GGA_-_UAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 3: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 8
3 3 9
4 4 5
5 6 7
6 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 4 7 O2'/Bifurcated trans
3 4 8 Watson-Crick/O2' ?
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters