Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2j021W.e30-40
Source: [PDB-id:chain] 2j02:W (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 3 OF 4) THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E- SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II.
Source: Compound E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED
Source: Resolution 2.80 ANGSTROMS.
Position (30, 40)
Primary structure ('_': anchors) _AUUGAAAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 5 6 ↑
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
7 9 10 &larr
8 10 11 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 3 9 Watson-Crick/Watson-Crick cis y
3 4 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters