Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2j021A.e594-604
Source: [PDB-id:chain] 2j02:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 3 OF 4) THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E- SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II.
Source: Compound 16S RRNA
Source: Resolution 2.80 ANGSTROMS.
Position (594, 604)
Primary structure ('_': anchors) _GGCUCAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 2 11
4 3 4
5 6 7
6 7 8
7 8 9
8 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 3 9 Watson-Crick/Watson-Crick cis
3 4 7 O2'/Bifurcated ?
4 4 8 Bifurcated/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters