Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb2j01FA.n1147-1197
Source: [PDB-id:chain] 2j01:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.80 ANGSTROMS.
Position (1151, 1193), (1155, 1190)
Primary structure ('_': anchors) _AA_-_GAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 6: C2'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 6: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 →
2 5 7 ↑
3 7 8 ↑
4 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Bifurcated/O2' trans
3 3 7 Watson-Crick/Watson-Crick trans
4 3 8 O2'/Watson-Crick ?
5 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters