Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Hairpin pdb2j011B.e34-48
Source: [PDB-id:chain] 2j01:B (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I.
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 2.80 ANGSTROMS.
Position (34, 48)
Primary structure ('_': anchors) _UCCCAUUCCGAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-endo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 11 &larr
2 2 3 ↑
3 4 5 ↑
4 6 11 →
5 9 10 ↑
6 10 12 ↑
7 11 15 ↑
8 12 13 ↑
9 13 14 ↑
10 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 4 15 O2'/Watson-Crick cis y
3 5 11 Watson-Crick/Watson-Crick cis
4 6 13 Watson-Crick/O2' cis y
5 7 12 Bifurcated/O2' trans y
6 11 14 Bifurcated/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters