Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-7-Internal Loop pdb2j00FA.n577-619
Source: [PDB-id:chain] 2j00:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E- SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 2.80 ANGSTROMS.
Position (583, 613), (591, 607)
Primary structure ('_': anchors) _GGGAG_-_UGAAAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 4 14 &larr
5 5 6 ↑
6 6 7 ↑
7 8 9 ↑
8 9 10 ↑
9 10 11 ↑
10 11 12 ↑
11 12 13 ↑
12 14 15 ↑
13 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 3 4 C/O2' ?
3 3 14 Bifurcated/O2' ?
4 4 13 Watson-Crick/O2' ?
5 6 9 Watson-Crick/Watson-Crick cis y
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters