Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb2j001A.n134-168
Source: [PDB-id:chain] 2j00:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E- SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.
Source: Compound 16S RRNA
Source: Resolution 2.80 ANGSTROMS.
Position (136, 166), (143, 158)
Primary structure ('_': anchors) _GGACAA_-_CUAAUCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 14: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 6 7 ↑
6 7 8 ↑
7 9 10 ↑
8 10 11 ↑
9 12 13 ↑
10 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis y
2 3 15 Watson-Crick/Watson-Crick cis y
3 4 13 Hoogsteen/Watson-Crick trans y
4 5 12 Hoogsteen/Watson-Crick trans
5 6 11 Watson-Crick/Hoogsteen trans
6 7 10 Watson-Crick/Hoogsteen trans y
7 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters