Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-6-1-1-6-Multiloop pdb2j001A.m48-350
Source: [PDB-id:chain] 2j00:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E- SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.
Source: Compound 16S RRNA
Source: Resolution 2.80 ANGSTROMS.
Position (50, 348), (57, 95), (102, 305), (307, 328), (330, 341)
Primary structure ('_': anchors) _AUGCAA_-_GGACGG_-_A_-_A_-_GCAGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-exo, 7: C2'-endo, 12: C2'-endo, 18: C2'-endo, 24: C2'-endo, 26: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		11: syn, 12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 25 &larr
2 2 3 ↑
3 3 4 ↑
4 6 27 →
5 8 10 →
6 9 10 ↑
7 13 14 ↑
8 14 15 ↑
9 15 16 ↑
10 16 18 →
11 19 21 →
12 19 24 ↓
13 21 22 ↑
14 23 24 ↑
15 27 28 ↑
16 28 29 ↑
17 29 30 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 26 O2'/Bifurcated ?
2 1 30 Watson-Crick/Watson-Crick cis y
3 3 29 Watson-Crick/Watson-Crick cis y
4 7 10 O2'/Watson-Crick trans
5 7 14 Bifurcated/O2' ?
6 8 9 Watson-Crick/Watson-Crick cis
7 15 18 Watson-Crick/Watson-Crick cis
8 16 17 Watson-Crick/Watson-Crick cis
9 16 26 O2'/Sugar ?
10 19 20 Watson-Crick/Watson-Crick cis
11 21 24 Watson-Crick/Watson-Crick cis
12 22 23 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters