Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2iy51T.e53-61
Source: [PDB-id:chain] 2iy5:T (&rarr PDB)
Source: Information PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNA AND A PHENYLALANYL-ADENYLATE ANALOG
Source: Compound TRNAPHE
Source: Resolution 3.10 ANGSTROMS.
Position (53, 61)
Primary structure ('_': anchors) _UUCGAUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 6: C2'-exo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 6 &larr
3 3 6
4 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis y
2 3 5 O2'/Watson-Crick ?
3 3 6 Bifurcated/O2' ?
4 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters