Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2i2tFB.n838-924
Source: [PDB-id:chain] 2i2t:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.22 ANGSTROMS.
Position (844, 918), (848, 914)
Primary structure ('_': anchors) _UUA_-_AUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-endo, 5: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 7: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 5 &larr
2 6 7
3 7 9 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/O2' ?
3 2 7 Hoogsteen/Hoogsteen cis y
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters