Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Hairpin pdb2i2t1B.e543-550
Source: [PDB-id:chain] 2i2t:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.22 ANGSTROMS.
Position (543, 550)
Primary structure ('_': anchors) _CUUAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 5 6 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 6 O2'/Bifurcated ?
3 3 5 O2'/Hoogsteen ?
4 3 6 O2'/Watson-Crick ?
5 5 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters