Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb2i2p1A.e1130-1136
Source: [PDB-id:chain] 2i2p:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.22 ANGSTROMS.
Position (1130, 1136)
Primary structure ('_': anchors) _UCCGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-endo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 4 &larr
3 5 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 3 Bifurcated/O2' ?
3 2 5 Watson-Crick/Watson-Crick trans y
4 3 5 Hoogsteen/Hoogsteen cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters