Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-9-Internal Loop pdb2hvyFE.n1-66
Source: [PDB-id:chain] 2hvy:E (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN H/ACA BOX RNP FROM PYROCOCCUS FURIOSUS
Source: Compound H/ACA RNA
FLIPPED INTERNAL
Source: Resolution 2.30 ANGSTROMS.
Position (9, 58), (19, 48)
Primary structure ('_': anchors) _UAU_-_UUGAGUGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: unknown, 5: C2'-endo, 6: C3'-exo, 7: C1'-exo, 10: C2'-exo, 11: unknown, 12: C3'-exo, 13: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: unknown, 6: syn, 11: unknown
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 7 9
4 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 6 14 Hoogsteen/Watson-Crick trans
3 7 13 O2'/Bifurcated ?
4 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters