Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb2huaFA.n16-23
Source: [PDB-id:chain] 2hua:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF CSFV IRES DOMAIN IIA
Source: Compound CSFV IRES DOMAIN IIA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (10, 28), (16, 23)
Primary structure ('_': anchors) _ACUA_-_GACGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 3: C4'-exo, 4: C4'-exo, 10: O4'-endo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
4 5 6 ↑
5 8 9 &larr
6 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/O2' ?
3 3 12 O2'/Bifurcated ?
4 4 9 Watson-Crick/Watson-Crick cis
5 6 7 Watson-Crick/Watson-Crick cis
6 7 8 Hoogsteen/O2' ?
7 8 9 Bifurcated/O2' ?
8 8 10 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters