Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-1-Internal Loop pdb2huaFA.n1-40
Source: [PDB-id:chain] 2hua:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF CSFV IRES DOMAIN IIA
Source: Compound CSFV IRES DOMAIN IIA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (7, 34), (9, 29)
Primary structure ('_': anchors) _AAAC_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C4'-exo, 3: C1'-exo, 4: C3'-exo, 5: C4'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 8 &larr
2 4 5 ↑
3 5 6 ↑
4 5 7 →
5 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Hoogsteen/O2' ?
2 1 9 Watson-Crick/Watson-Crick cis
3 2 8 Bifurcated/O2' trans y
4 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters