Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-4-Internal Loop pdb2hua1A.n1-40
Source: [PDB-id:chain] 2hua:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF CSFV IRES DOMAIN IIA
Source: Compound CSFV IRES DOMAIN IIA
Source: Resolution NOT APPLICABLE.
Position (7, 34), (9, 29)
Primary structure ('_': anchors) _A_-_AAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 5: C4'-exo, 6: C3'-exo, 7: C1'-exo, 8: C4'-exo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 7 &larr
3 3 5
4 4 5
5 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Bifurcated/O2' trans y
3 3 4 Watson-Crick/Watson-Crick cis
4 7 9 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters