Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2hhhFA.n1382-1470
Source: [PDB-id:chain] 2hhh:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF KASUGAMYCIN BOUND TO THE 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.35 ANGSTROMS.
Position (1383, 1469), (1388, 1463)
Primary structure ('_': anchors) _GAAGU_-_UCAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 10
3 4 5
4 5 6
5 6 7
6 6 8
7 9 10
8 10 11
9 11 12
10 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Watson-Crick/Watson-Crick cis y
3 3 11 Watson-Crick/Watson-Crick cis
4 4 10 Watson-Crick/Watson-Crick cis
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters