Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-9-Internal Loop pdb2hhhFA.n1098-1131
Source: [PDB-id:chain] 2hhh:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF KASUGAMYCIN BOUND TO THE 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.35 ANGSTROMS.
Position (1100, 1129), (1110, 1120)
Primary structure ('_': anchors) _GGCACUCU_-_AGUUGCCAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 20 →
2 3 4 ↑
3 4 5 ↑
4 5 6 ↑
5 6 13 →
6 8 9 ↑
7 9 10 ↑
8 16 17 ↑
9 20 21 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 21 Watson-Crick/Watson-Crick cis
2 3 19 Watson-Crick/Watson-Crick cis y
3 6 16 Hoogsteen/Watson-Crick trans y
4 7 16 Watson-Crick/Watson-Crick cis
5 7 18 Bifurcated/O2' ?
6 8 13 Sugar/Watson-Crick trans y
7 9 12 Watson-Crick/Watson-Crick cis y
8 10 11 Watson-Crick/Watson-Crick cis
9 13 15 Hoogsteen/O2' cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters