Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-8-Internal Loop pdb2hhh1A.n1098-1131
Source: [PDB-id:chain] 2hhh:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF KASUGAMYCIN BOUND TO THE 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.35 ANGSTROMS.
Position (1100, 1129), (1110, 1120)
Primary structure ('_': anchors) _AGUUGCCAG_-_GGCACUCU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		21: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 21 →
3 5 6 ↑
4 9 16 →
5 12 13 ↑
6 13 14 ↑
7 16 17 ↑
8 17 18 ↑
9 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 21 Watson-Crick/Watson-Crick cis
2 3 19 Watson-Crick/Watson-Crick cis y
3 4 15 Bifurcated/O2' ?
4 6 15 Watson-Crick/Watson-Crick cis
5 6 16 Hoogsteen/Watson-Crick trans y
6 7 9 Hoogsteen/O2' cis y
7 9 14 Sugar/Watson-Crick trans y
8 10 13 Watson-Crick/Watson-Crick cis y
9 11 12 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters