Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2hhh1A.i995-1018
Source: [PDB-id:chain] 2hhh:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF KASUGAMYCIN BOUND TO THE 30S RIBOSOMAL SUBUNIT
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.35 ANGSTROMS.
Position (995, 1018)
Primary structure ('_': anchors) _GGGUGCCCCGCGAGGGGAGCCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 8 9 ↑
4 10 11 ↑
5 12 13 ↑
6 13 14 ↑
7 16 17 ↑
8 17 18 ↑
9 18 19 ↑
10 19 20 ↑
11 20 21 ↑
12 21 22 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 Hoogsteen/Watson-Crick cis y
2 5 6 C/O2' ?
3 7 18 Watson-Crick/Watson-Crick cis
4 8 17 Bifurcated/Watson-Crick cis
5 11 13 Hoogsteen/O2' ?
6 11 14 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters