Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-2-Internal Loop pdb2hgu1A.n2136-2155
Source: [PDB-id:chain] 2hgu:A (&rarr PDB)
Source: Information 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGU CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGR.
Source: Compound 23S RRNA
Source: Resolution 4.51 ANGSTROMS.
Position (2130, 2158), (2136, 2155)
Primary structure ('_': anchors) _GUGAA_-_GG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 6: C2'-exo, 11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn, 5: syn, 6: syn, 10: syn, 11: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 3 5 Hoogsteen/O2' ?
3 4 10 C/Watson-Crick cis y
4 5 8 Watson-Crick/C trans y
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters