Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb2hgu1A.n1222-1271
Source: [PDB-id:chain] 2hgu:A (&rarr PDB)
Source: Information 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGU CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGR.
Source: Compound 23S RRNA
Source: Resolution 4.51 ANGSTROMS.
Position (1226, 1267), (1230, 1264)
Primary structure ('_': anchors) _GAU_-_AA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 4: C4'-exo, 5: C2'-exo, 6: C4'-exo, 7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 O2'/Bifurcated ?
2 1 9 Watson-Crick/Watson-Crick cis
3 4 5 Hoogsteen/O2' ?
4 5 6 Watson-Crick/Watson-Crick cis
5 5 7 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters