Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb2hgu1A.i2615-2630
Source: [PDB-id:chain] 2hgu:A (&rarr PDB)
Source: Information 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGU CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGR.
Source: Compound 23S RRNA
Source: Resolution 4.51 ANGSTROMS.
Position (2615, 2630)
Primary structure ('_': anchors) _CGCAGGAGGCUUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 4: C2'-exo, 5: C2'-exo, 12: C2'-exo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7
2 7 8
3 9 10
4 10 11
5 11 12
6 13 14
7 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 15 16 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters